Verfügbarkeit: Encyclopedia of bioinformatics and computational biology

Encyclopedia of bioinformatics and computational biology: Volume 2 Topics

Gespeichert in:

Bibliographische Detailangaben
Weitere beteiligte Personen:	Gaeta, Bruno (HerausgeberIn), Ranganathan, Shoba (HerausgeberIn), Gribskov, Michael (HerausgeberIn), Nakai, Kenta (HerausgeberIn)
Format:	Buch
Sprache:	Englisch
Veröffentlicht:	Amsterdam ; Boston ; Heidelberg Elsevier [2019]
Schlagwörter:	Aufsatzsammlung
Links:	http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=030621682&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA
Umfang:	xxiii, 1161 Seiten Illustrationen, Diagramme
ISBN:	9780128153659

Internformat

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Datensatz im Suchindex

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adam_text	CONTENTS OF VOLUME 2 Editors in Chief v Volume Editors vii List of Contributors for Volume 2 xv Preface xxiii VOLUME 2 The Gene Ontology Pascale Gaudet 1 Protein Functional Annotation Pier Luigi Martelli, Giuseppe Profiti, and Rita Casadio 8 Protein Post-Translational Modification Prediction Chi N1 Pang and Marc R Wilkins 15 Protein Properties Kentaro Tomii 28 The Evolution of Protein Family Databases Teresa K Attwood and Alex L Mitchell 34 Transmembrane Domain Prediction Pier Luigi Martelli, Castrense Savojardo, Giuseppe Profiti, and Rita Casadio 46 Prediction of Protein Localization Kenta Nakai and Kenichiro Itnai 53 Proteome Informatics Fredericjue Lisacek 60 Proteomics Data Representation and Databases Thibault Robin 76 Proteomics Mass Spectrometry Data Analysis Tools Aivett Bilbao 84 Biological Databases Sarinder K Dhillon 96 Functional Genomics Shalini Kaushik, Sandeep Kaushik, and Deepak Sharma 118 Transcription Factor Databases Edgar Wingender, Alexander Kel, and Mathias Krull 134 Protein-DNA Interactions Preeti Pandey, Sabeeha Hasnain, and Shandar Ahmad 142 Gene Regulatory Network Review Enze Liu, Lang Li, and Lijun Cheng 155 MicroRNA and IncRNA Databases and Analysis Xiangying Sun and Michael Gribskov 165 IX x Contents of Volume 2 Gene-Gene Interactions: An Essential Component to Modeling Complexity for Precision Medicine Molly A Hall Brian S Cole, and Jason H Moore 171 Genome Informatics Anil K Kesarwani, Ankit Malhotra, Anuj Srivastava, Guruprasad Ananda, Haitham Ashoor, Parveen Kumar, Rupesh K Kesharwani, Vishal K Sarsani, Yi Li, Joshy George, and R Krishna Murty Karuturi 178 Genome Annotation Josep F Abril and Sergi Castellano 195 Repeat in Genomes: How and Why You Should Consider Them in Genome Analyses? Emmanuelle Lerat 210 Bioinformatics Approaches for Studying Alternative Splicing Prasoon K Thakur, Hukam C Rawal, Mina Obuca, and Sandeep Kaushik 221 Genome-Wide Association Studies William S Bush 235 Gene Mapping Kelly L Williams 242 Genome Databases and Browsers Dean Southwood and Shoba Ranganathan 251 Comparative and Evolutionary Genomics Takeshi Kawashima 257 Genome Alignment Tetsushi Yada 268 Phylogenetic Footprinting Hiroyuki Toh 284 Chromatin: A Semi-Structured Polymer Wayne K Dawson, Michal Lazniewski, and Dariusz Plewczynski 288 Nucleosome Positioning Vladimir B Teifand Christopher T Clarkson 308 Learning Chromatin Interaction Using Hi-C Datasets Wing-Kin Sung 31g Transcriptome Informatics Liang Chen and Garry Wong 324 Transcriptomic Databases Askhat Molkenov, Altyn Zhelambayeva, Akbar Yermekov, Saule Mussurova, Aliya Sarlzytbayeva, Yerbol Kalykhbergenov, Zhaxybay Zhumadilov, and Ulykbek Kairov 341 Next Generation Sequence Analysis Christian Rockmann, Christoph Endrullat, Marcus Frohme, and Heike Pospisil 352 Transcriptomic Data Normalization Fatemeh Vafaee, Hamed Dashti, and Hamid Alinejad-Rokny 364 Differential Expression From Microarray and RNA-seq Experiments Marc Delord 372 Expression Clustering Xiaoxin Ye and Joshua WK Ho 3gg Metabolome Analysis Saravanan Dayalan, Jianguo Xia, Rachel A Spicer, Reza Salek, and Lite Roessner 396 Contents ot Volume 2 xi Mass Spectrometry-Based Metabolomic Analysis Russell Pickford 410 Metabolie Profiling Joram M Posma 426 Metabolie Models Jean-Marc Schwartz and Zita Soons 438 Protein Structural Bioinformatics: An Overview M Michael Gromiha, Raju Nagarajan, and Samuel Selvaraj 445 Protein Structure Databases David R Armstrong, John M Berrisford, Matthew J Conroy, Alice R Clark, Deepti Gupta, and Abhik M ukhopadhyay 460 Protein Structure Classification Natalie L Dawson, Sayoni Das, Jonathan G Lees, and Christine Orengo 472 Secondary Structure Prediction Jonas Reeb and Burkhard Rost 488 Protein Three-Dimensional Structure Prediction Sanne Abein, Klaas Anton Feenstra, and Jaap Heringa 497 Protein Structure Analysis and Validation Tsuyoshi Shirai 512 Protein Structure Visualization Sandeep Kaushik and Soumya Lipsa Rath 520 Computational Tools for Structural Analysis of Proteins Luciano A Abriata 539 Molecular Dynamics and Simulation Liangzhen Zheng, Amr A Alhossary, Chee-Keong Kwoh, and Yuguang Mu 550 Nucleic-Acid Structure Database Airy Sanjeev, Venkata SK Mattaparthi, and Sandeep Kaushik 567 RNA Structure Prediction Junichi Jwakiri and Kiyoshi Asai 575 Rational Structure-Based Drug Design Varun Khanna, Shoba Ranganathan, and Nikolai Petrovsky 585 Chemoinformatics: From Chemical Art to Chemistry in Silico Jaroslaw Polanski 601 Fingerprints and Pharmacophores Daniela Schuster 619 Public Chemical Databases Sunghwan Kim 628 Chemical Similarity and Substructure Searches Nils M Kriege, Lina Humbeck, and Oliver Koch 640 Binding Site Comparison - Software and Applications Christiane Ehrt, Tobias Brinkjost, and Oliver Koch 650 Quantitative Structure-Activity Relationship (QSAR): Modeling Approaches to Biological Applications Swathik Claranda Peter, Jaspreet Kaur Dhanja, Vidhi Malik, Navaneethan Radhakrishnan, Mannu Jayakanthan, and Durai Sundar 661 Pharmacophore Development Balakumar Chandrasekaran, Nikhil Agrawal, and Sandeep Kaushik 677 xii Contents of Volume 2 Introduction of Docking-Based Virtual Screening Workflow Using Desktop Personal Computer Muhammad Yusuf, Ari Hardianto, Muchtaridi Muchtaridi, Rina F Nuwarda, and Toto Subroto 688 Molecular Phylogenetics Michael A Charleston Evolutionary Models David A Liberies and Barbara R Holland 712 Molecular Clock Cara Van Der Wal and Simon YW Ho 719 Phylogenetic Tree Rooting Richard ) Edwards 727 Tree Evaluation and Robustness Testing Mahendra Mariadassou, Avner Bar-Hen, and Hirohisa Kishino 736 Applications of the Coalescent for the Evolutionary Analysis of Genetic Data Miguel Arenas 746 Population Genetics Conrad f Burden 759 Computational Systems Biology Sucheendra K Palaniappan, Ayako Yachie-Kinoshita, and Samik Ghosh 789 Pathway Informatics Sarita Poonia, Smriti Chawla, Sandeep Kaushik, and Debarka Sengupta 796 Network Inference and Reconstruction in Bioinformatics Paolo fieri, Lorenzo Farina, Manuela Petti, Laura Astolfi, Paola Pad, and Filippo Castiglione 805 Graphlets and Motifs in Biological Networks Laurentino Quiroga Moreno 814 Protein-Protein Interactions: An Overview Edson L Folador, Sandeep Tiwari, Camila E Da Paz Barbosa, Syed B Jamal, Marco Da Costa Schulze, Debmalya Barh, and Vasco Azevedo 821 Prediction of Protein-Protein Interactions: Looking Through the Kaleidoscope Anna Laddach, Sun Sook Chung, and Franca Fraternali 834 Protein-Protein Interaction Databases Ashwini Patil 849 Computational Approaches for Modeling Signal Transduction Networks Zhongming Zhao and Junfeng Xia 856 Cell Modeling and Simulation Ayako Yachie-Kinoshita and Kazunari Kaizu 864 Quantitative Modelling Approaches Filippo Castiglione, Emiliano Mancini, Marco Pedicini, and Abdul Salam Jarrah 874 Data Formats for Systems Biology and Quantitative Modeling Martin Golebiewski 884 Computational Lipidomics Josch K Pauling 894 Multi-Scale Modelling in Biology Socrates Dokos 900 Contents of Volume 2 xiii Computational Immunogenetics Marta Gomez Perosanz, Giulia Russo, Jose Luis Sanchez-Trincado Lopez, Marzio Pennisi, Pedro A Reche, Adrian Shepherd, and Francesco Pappakrdo 906 Immunoinformatics Databases Christine LP Eng, Tin Wee Tan, and Joo Chuan Tong 931 Study of Human Antibody Responses From Analysis of Immunoglobulin Gene Sequences Katherine JL Jackson 940 Epitope Predictions Roman Kogay and Christian Schonbach 952 Immunoglobulin Clonotype and Ontogeny Inference Pazit Polak, Ramit Mehr, and Gur Yaari 972 Quantitative immunology by Data Analysis Using Mathematical Models Shoya Iwanami and Shingo Iwami 984 Bioimage Informatics Sorayya Malek, Mogeeb Mosleh, Sarinder K Dhillon, and Pozi Milow 993 Bioimage Databases Arpah Abu and Sarinder K Dhillon 1011 Segmentation Techniques for Bioimages Saowaluck Kaewkamnerd, Apichart Intarapanich, and Sissades Tongsima 1028 Translational and Disease Bioinformatics Sandeep Kaushik, Chakrawarti Prasun, and Deepak Sharma 1046 Translational Bioinformatics Databases Onkar Singh, Nai-Wen Chang, Hong-Jie Dai, and Jitendra Jonnagaddala 1058 Electronic Health Record Integration Hong Yung Yip, Nur A Taib, Haris A Khan, and Sarinder K Dhillon 1063 Genome Databases and Browsers for Cancer Madhu Goyal 1077 Text Mining Resources for Bioinformatics Sandeep Kaushik, Priyanka Baloni, and Charu K Midha 1083 Preclinical: Drug Target Identification and Validation in Human Meena K Sakharkar, Karthic Rajamanickam, Chidambaram S Babu, Jitender Madan, Ramesh Chandra, and Jian Yang 1093 Biomedical Text Mining Hagit Shatkay 1099 Biodiversity Databases and Tools Lina AM Zalani, Kho S Jye, Shaarmini Balakrishnan, and Sarinder K Dhillon 1110 Challenges in Creating Online Biodiversity Repositories With Taxonomic Classification Mohd NM Ali, Amy Y Then Hui, and Sarinder K Dhillon 1124 Ecological Networks Kazuhiro Takemoto and Midori Hda 1131 Dedicated Bioinformatics Analysis Hardware Bertil Schmidt and Andreas Hildebrandt 1142 Computational Pipelines and Workflows in Bioinformatics Jeremy Leipzig 1151
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spellingShingle	Encyclopedia of bioinformatics and computational biology
subject_GND	(DE-588)4143413-4
title	Encyclopedia of bioinformatics and computational biology
title_auth	Encyclopedia of bioinformatics and computational biology
title_exact_search	Encyclopedia of bioinformatics and computational biology
title_full	Encyclopedia of bioinformatics and computational biology Volume 2 Topics editors in chief: Shoba Ranganathan, Macquarie University, Sydney, NSW, Australia, Michael Gribskov, Purdue University, West Lafayette, IN, United States, Kenta Nakai, The University of Tokyo, Tokyo, Japan, Christian Schönbach, Nazarbayev University, School of Science and Technology, Department of Biology, Astana, Kazakhstan
title_fullStr	Encyclopedia of bioinformatics and computational biology Volume 2 Topics editors in chief: Shoba Ranganathan, Macquarie University, Sydney, NSW, Australia, Michael Gribskov, Purdue University, West Lafayette, IN, United States, Kenta Nakai, The University of Tokyo, Tokyo, Japan, Christian Schönbach, Nazarbayev University, School of Science and Technology, Department of Biology, Astana, Kazakhstan
title_full_unstemmed	Encyclopedia of bioinformatics and computational biology Volume 2 Topics editors in chief: Shoba Ranganathan, Macquarie University, Sydney, NSW, Australia, Michael Gribskov, Purdue University, West Lafayette, IN, United States, Kenta Nakai, The University of Tokyo, Tokyo, Japan, Christian Schönbach, Nazarbayev University, School of Science and Technology, Department of Biology, Astana, Kazakhstan
title_short	Encyclopedia of bioinformatics and computational biology
title_sort	encyclopedia of bioinformatics and computational biology topics
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