Cytochrome Complexes: evolution, structures, energy transduction, and signaling
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| Format: | Buch |
| Sprache: | Englisch |
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Dordrecht
Springer
[2016]
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| Schriftenreihe: | Advances in photosynthesis and respiration
41 |
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| Links: | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=028714230&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| Umfang: | xlv, 739 Seiten Illustrationen |
| ISBN: | 9789401774796 |
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| 245 | 1 | 0 | |a Cytochrome Complexes |b evolution, structures, energy transduction, and signaling |c edited by William A. Cramer, Department of Biological Sciences , Hockmeyer Building of Structural Biology, Purdue University, West Lafayette, Indiana USA; Toivo Kallas, Deprtment of Biology, Halsey Science Center, University of Wisconsin-Oshkosh, Oshkosh, Wisconsin, USA |
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Datensatz im Suchindex
| _version_ | 1819265911941496832 |
|---|---|
| adam_text | Titel: Cytochrome complexes
Autor: Cramer, William A
Jahr: 2016
Contents
From the Series Editors v
Series Editors xiii
Preface xxix
Editors xxxi
Remembrances xxxv
Contributors xli
Part I: Diversity and Evolution
1 Keilin, Cytochrome and Its Nomenclature 3-11
Derek S. Bend all (deceased)
Summary 3
I. The Cytochromes and History 3
References 10
2 When Did Hemes Enter the Scene of Life? On the Natural
History of Heme Cofactors and Heme-Containing
Enzymes 13-24
Anne-Lise Ducluzeau and Wolfgang Nitschke
Summary 13
I. Introduction 14
II. Hemes in LUCA; Pros and Cons 15
III. An Alternative Scenario 19
IV. Why All the Fuzz? 21
Acknowledgments 22
References 22
3 The Diversity of Photosynthetic Cytochromes 25-50
Erica L.-W. Majumder and Robert E. Blankenship
Summary 25
I. Introduction 26
II. Cytochromes in Anoxygenic Photosynthetic Electron Transport
Chains 26
xvii
xviii
III. Cytochromes in Oxygenic Photosynthetic Electron Transport
Chains 40
IV. Conclusions 44
Acknowledgments 44
References 44
4 Evolution of Photosynthetic NDH-1: Structure
and Physiological Function 51-70
Toshiharu Shikanai and Eva-Marl Aro
Summary 51
I. Introduction 52
II. Function and Structure of Cyanobacterial NDH-1 53
III. Chloroplast NDH-1 and Cyclic Electron Transport Around PSI 57
IV. Structure of Chloroplast NDH-1 58
V. Evolution of Chloroplast NDH-1 in Land Plants 60
VI. Physiological Reason for Evolutionary Increase in Complexity
of Chloroplast NDH-1 63
VII. The Origin of Photosynthetic NDH-1 64
VIII. Concluding Remarks 64
Acknowledgements 65
References 65
Part II: Theoretical Aspects of Electron Transfer
5 Fundamentals of Electron Transfer in Proteins 73-98
Lev I. Krishtalik
Summary 73
I. Introduction 74
II. The General Theory of Charge Transfer Reactions in Polar
Media: An Outline 74
III. Proteins as Specific Structured Polar Media 83
IV. Equilibrium Energies of Electron Transfer 85
V. Reorganization Energy and Activation Energy 90
VI. Long-Range Electron Transfer 93
References 95
6 Theoretical Analysis of Electron Transfer in Proteins:
From Simple Proteins to Complex Machineries 99-127
G. Matthias Ullmann, Lars Mueller,
and Elisa Bombarda
Summary 99
I. Introduction 100
II. Theoretical Description of Electron Transfer Reactions 102
III. Electrostatic Methods for Estimating Reaction Free Energies
and Reorganization Energies 108
xix
IV. Complex Electron Transfer Proteins 120
V. Conclusions 122
Acknowledgements 125
References 125
Part III: Molecular Structures and Functions
of Cytochrome Complexes
A. Photosynthetic Reaction Centers and Linked Cytochromes
(Chapters 7 and 8)
7 Higher Plant and Cyanobacteriai Photosystem I:
Connected Cytochrome Pathways 131-142
Yuval Mazor and Nathan Nelson
Summary 131
I. Introduction 132
II. Cytochrome be Complex and Its Central Role in Photosynthetic
and Respiratory Electron Transport Chains 132
III. Oceanic Photosynthesis 133
IV. Interactions Between Photosystem I and Small Electron Donors 134
V. Phage Encoded PSI Complex 139
References 140
8 Cytochrome b559 in Photosystem II 143-175
Frank Muh and Athina Zouni
Summary 144
I. Introduction 144
II. Structure 146
III. Redox Properties 158
IV. Function of Cytochrome b559 167
V. Conclusions and Outlook 169
Acknowledgements 170
References 170
B. Structure-Function of Cytochrome bci and b@f Complexes
(Chapters 9,10,11,12,13,14 and 15)
9 Structure-Function of the Cytochrome b f Lipoprotein
Complex 177-207
William A. Cramer and S. Saif Hasan
Summary 178
I. Introduction 179
II. Historical Perspective 179
III. Cytochrome b6f and bc- Complexes; General Aspects 180
IV. Structure-Function of the Cyt bef Complex 180
V. Lipids in the bef Lipoprotein Complex 190
XX
VI. Pathways of Cyclic Electron Transport (CET) 191
VII. Functions of the bef Complex in the Linear Electron Transport
(LET) Pathway; the Q Cycle 194
VIII. Quinone-Mediated H+ Transfer Pathways; n-Side to Quinone
Binding Site: Heme cn; p-Side PEWY Exit Pathway
with Invaginated H20 Pocket 197
IX. The Cytochrome bef Complex as a Hetero-Oligomeric
Membrane Lipoprotein 200
Acknowledgements 200
References 200
10 Structure-Function Studies of the Cytochrome bei Complex
of Anoxygenic Photosynthetic Purple Bacteria 209-235
Lothar Esser, Fei Zhou, Chang-An Yu,
and Di Xia
Summary 210
I. Introduction 211
II. The Mechanism of Electron Transfer (ET)-Coupled Proton
Translocation Function of Cyt bci Complexes 215
III. Comparison of Crystal Structures Between Bacterial
and Mitochondrial Cyt bci Complexes 216
IV. Structural Studies of Cyt be 1 with Bound Inhibitors 222
V. Experimental Verification of the Bifurcated ET Mechanism 225
VI. The Mechanisms of Proton Uptake at the Qn Site and Exit
at the QP Site 227
VII. Future Perspective 229
Acknowledgements 230
References 230
11 Rieske Iron-Sulfur Protein Movement and Conformational
Changes in Cytochrome bc-bf Complexes 237-251
Li-shar Huang and Edward Berry
Summary 237
I. Introduction 237
II. Requirement for Movement of the ISP Extrinsic Domain
to Shuttle Electrons 238
III. Classification and Depiction of Different Positions of the ISP-ED 238
IV. Conformational Changes in the ISP Hinge Region 243
V. Does the ISP-ED Undergo Internal Conformation Changes? 248
Acknowledgements 249
References 249
12 Structural Perspective of Ferredoxin NAD(P)H Reductase
Reactions with Cytochrome b6f Complexes 253-264
Genji Kurisu
Summary 253
I. The Perspective 253
References 263
xxi
13 Alternative Rieske Iron-Sulfur Subunits and Small
Polypeptides of Cyanobacterial Cytochrome b^f
Complexes 265-279
Gabor Bernat, Dirk Schneider, and Matthias Rogner
Summary 265
I. Introduction 266
II. Multiple Rieske-Proteins and Cytochrome b6f Heterogeneity 268
III. Small bona fide Cytochrome bef Subunits 272
IV. Loosely Bound Subunits 273
Acknowledgements 275
References 275
14 Inter-Monomer Electron Transfer in Cytochrome be
Complexes 281-294
Marcin Sarewicz, Robert Ekiert, and Artur Osyczka
Summary 281
I. Introduction 282
II. Implications from Structures for Inter-Monomer Electron
T ransfer 282
III. Theoretical Prediction for the Time Scale of Heme bL-bi
Electron T ransfer 283
IV. Experimental Evidence for Inter-Monomer Electron Transfer 285
V. Mechanistic Consequences of Inter-Monomer Electron Transfer 288
VI. Physiological Significance of Inter-Monomer Electron Transfer 289
VII. Conclusions 290
Acknowledgements 291
References 291
15 Heme Cj or cn of the Cytochrome b6f Complex, A Short
Retrospective 295-306
Francesca Zito and Jean Alric
Summary 295
I. Introduction 296
II. Early Evidence: Heme c-, of the Cytochrome b6f Complex,
A Functional Retrospective 297
III. Tridimensional Structure 300
IV. Heme Ci/Qi Site Directed Mutants 301
V. NQNO, A Not-So-Good Inhibitor of the Qj Site of the Cytochrome
bef Complex 303
VI. Concluding Remarks 303
Acknowledgements 304
References 305
xxii
C. Cytochrome Oxidases (Chapters 16,17,18 and 19)
16 Structure and Function of Bacterial Cytochrome c
Oxidases 307-329
Joseph A. Lyons, Florian Hilbers,
and Martin Caffrey
Summary 307
I. Introduction 308
II. Respiratory Chain 308
III. Heme Copper Oxidases 309
IV. Pathways Within HCO 315
V. Electron Transfer 319
VI. Oxygen Channel 320
VII. The Catalytic Cycle 321
VIII. Side Reactions in CcO 323
IX. Conclusions 324
Acknowledgements 324
References 324
17 The Respiratory Terminal Oxidases (RTOs)
of Cyanobacteria 331-355
Georg Schmetterer
Summary 331
I. Introduction 332
II. Types of RTOs Occurring in Cyanobacteria and Definitions 332
III. Genes Encoding Putative Subunits of Cyanobacterial RTOs 341
IV. Mitochondrial-Type Cytochrome c Oxidases (Cox) 342
V. Alternate Respiratory Terminal Oxidases (ARTOs) 343
VI. cbb3 Type Cytochrome c Oxidases 345
VII. Homologs of Cytochrome bd Quinol Oxidases 346
VIII. Plastidic-Type Terminal Oxidases (Ptox) 347
IX. Cellular Location of Cyanobacterial RTOs 348
X. Regulation of Expression of Cyanobacterial RTOs 349
Acknowledgements 351
References 351
18 XFEL Studies on Bovine Heart Cytochrome c Oxidase 357-373
Shinya Yoshikawa
Summary 357
I. Introduction 358
II. Properties of the Resting Oxidized Form of Bovine Heart CcO 359
III. Redox Properties of the Resting Oxidized Bovine Heart CcO 360
IV. Resonance Raman Analysis of the Resting Oxidized CcO 362
V. X-ray Structural Analyses of the Resting Oxidized CcO Using
Third Generation Synchrotron Radiation Facilities 362
xxiii
VI. X-ray Structural Analyses of the Resting Oxidized CcO Obtained
at an XFEL Facility 366
VII. Picobiology 368
Acknowledgements 371
References 372
19 Structure and Mechanism of Action of the Alternative Quinol
Oxidases 375-394
Luke Young, Benjamin May, Tomoo Shiba,
Shigeharu Harada, Daniel Ken Inaoka, Kiyoshi Kita,
and Anthony L. Moore
Summary 375
I. General Introduction 376
II. Overall Structure of the Alternative Oxidases 377
III. Mechanism of Di-oxygen Reduction by the Alternative Oxidases 385
IV. Concluding Remarks 391
Acknowledgements 392
References 392
Part IV: Superoxide Generation in Cytochrome
be Complexes
20 Mechanisms of Superoxide Generation and Signaling
in Cytochrome be Complexes 397-417
Danas Baniulis, S. Saif Hasan, Inga Miliute,
and William A. Cramer
Summary 397
I. Introduction 398
II. Mechanisms of Superoxide Generation in Cytochrome be
Complexes 400
III. Signaling Function of ROS Produced by Cytochrome be
Complexes 405
References 410
21 Electron Transfer Reactions at the Q0 Site of the Cytochrome
bci Complex: The Good, the Bad, and the Ugly 419-434
Nicholas Fisher, Michael K. Bowman, and David M. Kramer
Summary 419
I. Introduction 420
II. Superoxide Production by the bc^ Complex and the Question
of SQ0 Reactivity 421
III. Structure and Mechanism of the Q0 Site: Keeping the Chemistry
Under Control 422
Acknowledgements 430
References 431
xxiv
Part V: Cytochrome Complexes, Signaling,
and Regulation
22 The Cytochrome bsf Complex: A Regulatory Hub Controlling
Electron Flow and the Dynamics of Photosynthesis? 437-452
Giovanni Finazzi, Jun Minagawa,
and Giles N. Johnson
Summary 437
I. Introduction 438
II. H+/e~ Coupling in the Cytochrome bgf Complex and Its Role
in Photosynthetic Control 440
III. A Redox Kinetic Control of Cytochrome befl 443
IV. Linear Versus Cyclic Electron Flow 445
V. Role of Cytochrome b6f in State Transitions 446
VI. Conclusions 449
Acknowledgements 449
References 449
23 A Supercomplex of Cytochrome bf and Photosystem I
for Cyclic Electron Flow 453-462
Jun Minagawa
Summary 453
I. Introduction 454
II. Cyclic Electron Flow Is Essential 454
III. Cyclic Electron Flow and the Redox Status of the Chloroplast 456
IV. A Supercomplex in Charge of Cyclic Electron Flow
in Chlamydomonas 456
V. Perspectives 460
Acknowledgements 461
References 461
24 State Transition Kinases and Redox Signal Transduction
in Chloroplasts 463-477
Jean-David Rochaix
Summary 463
I. Introduction 464
II. The Role of the Stt7/STN7 Protein Kinase in State Transitions 466
III. Mobility and Location of LHCII 468
IV. How Is the Stt7/STN7 Kinase Activated? 469
V. Involvement of Stt7/STN7 in the Long Term Response 470
VI. Relationship Between Stt7/STN7 and Cyclic Electron Flow 471
VII. Conclusions and Perspectives 473
Acknowledgements 474
References 474
XXV
25 Regulating Synthesis of Cytochromes
479-498
Sebastien Zappa and Carl E. Bauer
Summary
479
480
481
482
487
490
493
493
I. Introduction
II. The Bi- and Tri-furcated Tetrapyrrole Pathway
III. Regulating Heme Biosynthesis
IV. Regulating Cytochrome Apoprotein Synthesis
V. Metal Homeostasis and Cytochrome Regulation
VI. Concluding Remarks
References
Part VI: Assembly of Cytochrome Complexes
and Super-Complexes
26 Cofactor Assembly of Cytochrome bc1 -b6f Complexes 501-525
Sara Guenthner Cline, Stephane Thierry Gabilly,
Nitya Subrahmanian, and Patrice Paul Hamel
27 Biogenesis of Cytochrome c Complexes: From Insertion
of Redox Cofactors to Assembly of Different Subunits 527-554
Bahia Khalfaoui-Hassani, Andreia F. Verissimo,
Namita P. Shroff, Seda Ekici, Petru-lulian Trasnea,
Marcel Utz, Hans-Georg Koch, and Fevzi Daldal
Summary
I. Introduction
II. Prosthetic Groups in bci and b6f
III. Pathways for the Covalent Attachment of Heme
Acknowledgements
References
502
502
503
505
517
517
Summary
I. Introduction
II. The cbfc 3-Cox
Acknowledgements
References
527
528
530
546
546
28 Assembly of Transmembrane b-Type Cytochromes
and Cytochrome Complexes
Hans-Georg Koch and Dirk Schneider
555-584
Summary
I. Introduction
II. Transmembrane b-Type Cytochromes in Respiratory
555
556
and Photosynthetic e~-Transfer Chains
559
III. Targeting and Membrane Insertion of b-Type Apo-Cytochromes 559
xxvi
IV. Structural Features Determining Heme Binding
to Membrane-Bound Apo-Cytochromes 567
V. Assembly of Individual Transmembrane Holo-Cytochromes 569
VI. Naturally Occurring and Designed Transmembrane Four-Helix
Bundle b-Type Cytochromes 574
VII. Assembly of Cytochrome b-Containing Membrane Protein
Complexes 576
Acknowledgements 578
References 578
29 Respiratory Cytochrome Supercomplexes 585-628
Giorgio Lenaz and Maria Luisa Genova
Summary 585
I. Introduction 586
II. Distribution and Composition of Respiratory Supercomplexes 589
III. Structure of Supercomplexes 592
IV. Functions of Respiratory Supercomplexes 600
V. A Role of Supercomplexes in Cell Physiology 616
References 617
Part VII: Branched Pathways and Cryptic Cytochromes
30 The Interaction Between Cytochrome f and Plastocyanin
or Cytochrome ce 631-655
Derek S. Bendall (deceased) and
Christopher J. Howe
Summary 631
I. Introduction 632
II. Evolution of Plastocyanin and Cytochrome c6 633
III. Structure of Cytochrome f 635
IV. Structure of Plastocyanin and Cytochrome c6 636
V. Structure of Specific Complexes 637
VI. Dynamics of Interaction 639
VIII. The Reaction In Vivo 646
Acknowledgements 649
References 649
31 Cytochrome eg of Cyanobacteria and Algae: From
the Structure to the Interaction 657-677
Irene Diaz-Moreno, Antonio Diaz-Quintana,
and Miguel A. De la Rosa
Summary 657
I. Introduction 658
II. Cytochrome c6 Structure and Properties 658
III. Cc6-lnvolving Photosynthetic Complexes 662
xxvii
IV. Cc6-lnvolving Respiratory Complexes 667
V. Conclusions and Perspectives 671
Acknowledgements 671
References 671
32 Electron Partitioning in Anoxic Phototrophic Bacteria 679-700
Melanie A. Spero, Saheed Imam, Daniel R. Noguera,
and Timothy J. Donohue
Summary 680
I. Introduction 680
II. Competition for Electrons of the Quinone Pool 681
III. The Role of Cytoplasmic Electron Sinks During
Photoheterotrophic Growth 685
IV. Recycling Reducing Power Captured in Pyridine Nucleotides 688
V. Modeling the Metabolism of Photosynthetic Organisms 692
VI. Concluding Remarks and Future Directions 694
Acknowledgements 694
References 695
33 Cytochrome c A of Chloroplasts 701-712
Christopher J. Howe, Robert H. Nimmo, Adrian C. Barbrook,
and Derek S. Bendall (deceased)
Summary 701
I. Introduction 702
II. The Protein 703
III. Omics Studies 706
IV. Distribution Outside the Green Plant Lineage 707
V. Possible Functions 708
VI. Evolution of Cytochrome c6a 709
VII. General Conclusions 710
Acknowledgements 711
References 711
34 Cryptic c6-Like and Cm Cytochromes of Cyanobacteria 713-734
Wojciech Bialek, Andrzej Szczepaniak, Piotr Kolesinski,
and Toivo Kallas
Summary 713
I. Introduction 714
II. Discovery of the c6-Like and cm Cytochromes 714
III. Cytochromes C6c and c6b 715
IV. Cytochrome Cm 722
V. Possible Functions of c6-Like and cm Cytochromes 725
VI. Concluding Remarks 729
Acknowledgements 730
References 730
Index
735-739
|
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| ctrlnum | (OCoLC)950860939 (DE-599)OBVAC12648071 |
| discipline | Biologie |
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| genre | (DE-588)4143413-4 Aufsatzsammlung gnd-content |
| genre_facet | Aufsatzsammlung |
| id | DE-604.BV043293151 |
| illustrated | Illustrated |
| indexdate | 2024-12-20T17:33:02Z |
| institution | BVB |
| isbn | 9789401774796 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-028714230 |
| oclc_num | 950860939 |
| open_access_boolean | |
| owner | DE-11 |
| owner_facet | DE-11 |
| physical | xlv, 739 Seiten Illustrationen |
| publishDate | 2016 |
| publishDateSearch | 2016 |
| publishDateSort | 2016 |
| publisher | Springer |
| record_format | marc |
| series | Advances in photosynthesis and respiration |
| series2 | Advances in photosynthesis and respiration |
| spellingShingle | Cytochrome Complexes evolution, structures, energy transduction, and signaling Advances in photosynthesis and respiration Signaltransduktion (DE-588)4318717-1 gnd Energieübertragung (DE-588)4134707-9 gnd Multiproteinkomplex (DE-588)4798068-0 gnd Cytochrome (DE-588)4148701-1 gnd Strukturbiologie (DE-588)1081522143 gnd |
| subject_GND | (DE-588)4318717-1 (DE-588)4134707-9 (DE-588)4798068-0 (DE-588)4148701-1 (DE-588)1081522143 (DE-588)4143413-4 |
| title | Cytochrome Complexes evolution, structures, energy transduction, and signaling |
| title_auth | Cytochrome Complexes evolution, structures, energy transduction, and signaling |
| title_exact_search | Cytochrome Complexes evolution, structures, energy transduction, and signaling |
| title_full | Cytochrome Complexes evolution, structures, energy transduction, and signaling edited by William A. Cramer, Department of Biological Sciences , Hockmeyer Building of Structural Biology, Purdue University, West Lafayette, Indiana USA; Toivo Kallas, Deprtment of Biology, Halsey Science Center, University of Wisconsin-Oshkosh, Oshkosh, Wisconsin, USA |
| title_fullStr | Cytochrome Complexes evolution, structures, energy transduction, and signaling edited by William A. Cramer, Department of Biological Sciences , Hockmeyer Building of Structural Biology, Purdue University, West Lafayette, Indiana USA; Toivo Kallas, Deprtment of Biology, Halsey Science Center, University of Wisconsin-Oshkosh, Oshkosh, Wisconsin, USA |
| title_full_unstemmed | Cytochrome Complexes evolution, structures, energy transduction, and signaling edited by William A. Cramer, Department of Biological Sciences , Hockmeyer Building of Structural Biology, Purdue University, West Lafayette, Indiana USA; Toivo Kallas, Deprtment of Biology, Halsey Science Center, University of Wisconsin-Oshkosh, Oshkosh, Wisconsin, USA |
| title_short | Cytochrome Complexes |
| title_sort | cytochrome complexes evolution structures energy transduction and signaling |
| title_sub | evolution, structures, energy transduction, and signaling |
| topic | Signaltransduktion (DE-588)4318717-1 gnd Energieübertragung (DE-588)4134707-9 gnd Multiproteinkomplex (DE-588)4798068-0 gnd Cytochrome (DE-588)4148701-1 gnd Strukturbiologie (DE-588)1081522143 gnd |
| topic_facet | Signaltransduktion Energieübertragung Multiproteinkomplex Cytochrome Strukturbiologie Aufsatzsammlung |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=028714230&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV019837546 |
| work_keys_str_mv | AT cramerwilliama cytochromecomplexesevolutionstructuresenergytransductionandsignaling AT kallastoivo cytochromecomplexesevolutionstructuresenergytransductionandsignaling |