Verfügbarkeit: Phylogenetic networks | Technische Universität München

Phylogenetic networks: concepts, algorithms and applications

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Bibliographische Detailangaben
Beteiligte Personen:	Huson, Daniel 1960- (VerfasserIn), Rupp, Regula (VerfasserIn), Scornavacca, Celine (VerfasserIn)
Format:	Buch
Sprache:	Englisch
Veröffentlicht:	Cambridge [u.a.] Cambridge Univ. Press 2010
Ausgabe:	1. publ.
Schlagwörter:	Datenverarbeitung Mathematik Cladistic analysis > Data processing Cladistic analysis > Mathematics Phylogeny Phylogenie Methode Phylogenetische Systematik Evolution Genanalyse Mathematisches Modell
Links:	http://assets.cambridge.org/97805217/55962/cover/9780521755962.jpg http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=021149998&sequence=000003&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA
Beschreibung:	Hier auch später erschienene, unveränderte Nachdrucke
Umfang:	XII, 362 S. zahlr. graph. Darst.
ISBN:	9780521755962

Internformat

MARC


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Datensatz im Suchindex

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adam_text	IMAGE 1 PHYLOGENETIC NETWORKS CONCEPTS, ALGORITHMS AND APPLICATIONS DANIEL H. HUSON EBERHARD-KARLS-UNIVERSITAT TUBINGEN, GERMANY REGULA RUPP EBERHARD-KARLS-UNIVERSITAT TUBINGEN, GERMANY CELINE SCORNAVACCA EBERHARD-KARLS-UNIVERSITAT TUBINGEN, GERMANY CAMBRIDGE UNIVERSITY PRESS IMAGE 2 CONTENTS PREFACE PAGE IX PART I INTRODUCTION 1 3 3 7 8 9 11 13 13 13 20 23 3.1 OVERVIEW 23 3.2 PHYLOGENETIC TREES 24 3.3 THE NUMBER OF PHYLOGENETIC TREES 27 3.4 MODELS OF DNA EVOLUTION 29 3.5 THE PHYLOGENETIC TREE RECONSTRUCTION PROBLEM 32 3.6 SEQUENCE-BASED METHODS 33 3.7 MAXIMUM PARSIMONY 33 3.8 BRANCH-SWAPPING METHODS 37 3.9 MAXIMUM LIKELIHOOD ESTIMATION 40 3.10 BOOTSTRAP ANALYSIS 43 1 BASICS L.L 1.2 1.3 1.4 1.5 1.6 2 SEQUENCE 2.1 2.2 2.3 OVERVIEW UNDIRECTED AND DIRECTED GRAPHS TREES ROOTED DAGS TRAVERSALS OF TREES AND DAGS TAXA, CLUSTERS, CLADES AND SPLITS ALIGNMENT OVERVIEW PAIRWISE SEQUENCE ALIGNMENT MULTIPLE SEQUENCE ALIGNMENT 3 PHYLOGENETIC TREES IMAGE 3 VI CONTENTS 3.11 BAYESIAN METHODS 45 3.12 DISTANCE-BASED METHODS 50 3.13 UPGMA 52 3.14 NEIGHBOR-JOINING 54 3.15 BALANCED MINIMUM EVOLUTION 56 3.16 COMPARING TREES 60 3.17 CONSENSUS TREES 63 3.18 THE NEWICK FORMAT 66 4 INTRODUCTION TO PHYLOGENETIC NETWORKS 68 4.1 OVERVIEW 69 4.2 WHAT IS A PHYLOGENETIC NETWORK? 69 4.3 UNROOTED PHYLOGENETIC NETWORKS 71 4.4 ROOTED PHYLOGENETIC NETWORKS 76 4.5 THE EXTENDED NEWICK FORMAT 81 4.6 WHICH TYPES OF NETWORKS ARE CURRENTLY USED IN PRACTICE? 83 PART II THEORY 85 5 SPLITS AND UNROOTED PHYLOGENETIC NETWORKS 87 5.1 OVERVIEW 87 5.2 SPLITS 88 5.3 COMPATIBILITY AND INCOMPATIBILITY 90 5.4 SPLITS AND CLUSTERS 91 5.5 SPLIT NETWORKS 93 5.6 THE CANONICAL SPLIT NETWORK 97 5.7 CIRCULAR SPLITS AND PLANAR SPLIT NETWORKS 102 5.8 WEAK COMPATIBILITY 105 5.9 THE SPLIT DECOMPOSITION 107 5.10 REPRESENTING TREES IN A SPLIT NETWORK 121 5.11 COMPARING SPLIT NETWORKS 122 5.12 T-THEORY 122 6 CLUSTERS AND ROOTED PHYLOGENETIC NETWORKS 127 127 128 132 133 138 140 6.1 6.2 6.3 6.4 6.5 6.6 OVERVIEW CLUSTERS, COMPATIBILITY AND INCOMPATIBILITY HASSE DIAGRAMS CLUSTER NETWORKS ROOTED PHYLOGENETIC NETWORKS THE LOWEST STABLE ANCESTOR IMAGE 4 VII CONTENTS 6.7 REPRESENTING TREES IN ROOTED NETWORKS 144 6.8 HARDWIRED AND SOFTWIRED CLUSTERS 146 6.9 MINIMUM ROOTED PHYLOGENETIC NETWORKS 149 6.10 DECOMPOSABILITY 150 6.11 TOPOLOGICAL CONSTRAINTS ON ROOTED NETWORKS 156 6.12 CLUSTER CONTAINMENT IN ROOTED NETWORKS 168 6.13 TREE CONTAINMENT 171 6.14 COMPARING ROOTED NETWORKS 171 PART III ALGORITHMS AND APPLICATIONS 185 7 PHYLOGENETIC NETWORKS FROM SPLITS 187 7.1 THE CONVEX HULL ALGORITHM 187 7.2 THE CIRCULAR NETWORK ALGORITHM 190 8 PHYLOGENETIC NETWORKS FROM CLUSTERS 193 193 194 198 201 210 216 216 216 218 219 223 227 232 233 240 250 10.1 DISTANCES AND SPLITS 250 10.2 MINIMUM SPANNING NETWORKS 251 10.3 SPLIT DECOMPOSITION 251 10.4 NEIGHBOR-NET 254 10.5 T-REX 261 8.1 8.2 8.3 8.4 8.5 CLUSTER NETWORKS DIVIDE-AND-CONQUER USING DECOMPOSITION GALLED TREES GALLED NETWORKS LEVEL- K NETWORKS 9 PHYLOGENETIC NETWORKS FROM SEQUENCES 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 CONDENSED ALIGNMENTS BINARY SEQUENCES AND SPLITS PARSIMONY SPLITS MEDIAN NETWORKS QUASI-MEDIAN NETWORKS MEDIAN-JOINING PRUNED QUASI-MEDIAN NETWORKS RECOMBINATION NETWORKS GALLED TREES 10 PHYLOGENETIC NETWORKS FROM DISTANCES IMAGE 5 VIII CONTENTS PHYLOGENETIC NETWORKS FROM TREES 265 11.1 CONSENSUS SPLIT NETWORKS 265 11.2 CONSENSUS SUPER SPLIT NETWORKS FOR UNROOTED TREES 268 11.3 DISTORTION-FILTERED SUPER SPHT NETWORKS FOR UNROOTED TREES 273 11.4 CONSENSUS CLUSTER NETWORKS FOR ROOTED TREES 274 11.5 MINIMUM HYBRIDIZATION NETWORKS 275 11.6 MINIMUM HYBRIDIZATION NETWORKS AND GALLED TREES 285 11.7 NETWORKS FROM MULTI-LABELED TREES 287 11.8 DLT RECONCILIATION OF GENE AND SPECIES TREES 289 PHYLOGENETIC NETWORKS FROM TRIPLES OR QUARTETS 300 12.1 TREES FROM ROOTED TRIPLES 300 12.2 LEVEL-/C NETWORKS FROM ROOTED TRIPLES 302 12.3 THE QUARTET-NET METHOD 308 DRAWING PHYLOGENETIC NETWORKS 312 13.1 OVERVIEW 312 13.2 CLADOGRAMS FOR ROOTED PHYLOGENETIC TREES 312 13.3 CLADOGRAMS FOR ROOTED PHYLOGENETIC NETWORKS 316 13.4 PHYLOGRAMS FOR ROOTED PHYLOGENETIC TREES 323 13.5 PHYLOGRAMS FOR ROOTED PHYLOGENETIC NETWORKS 324 13.6 DRAWING ROOTED PHYLOGENETIC NETWORKS WITH TRANSFER EDGES 327 13.7 RADIAL DIAGRAMS FOR UNROOTED TREES 328 13.8 RADIAL DIAGRAMS FOR SPLIT NETWORKS 329 SOFTWARE 332 14.1 SPLITSTREE 332 14.2 NETWORK 333 14.3 TCS 334 14.4 DENDROSCOPE 334 14.5 OTHER PROGRAMS 335 GLOSSARY 338 REFERENCES 343 INDEX 358
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author	Huson, Daniel 1960- Rupp, Regula Scornavacca, Celine
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spellingShingle	Huson, Daniel 1960- Rupp, Regula Scornavacca, Celine Phylogenetic networks concepts, algorithms and applications Datenverarbeitung Mathematik Cladistic analysis Data processing Cladistic analysis Mathematics Phylogeny Datenverarbeitung (DE-588)4011152-0 gnd Phylogenie (DE-588)4076110-1 gnd Methode (DE-588)4038971-6 gnd Phylogenetische Systematik (DE-588)4174592-9 gnd Evolution (DE-588)4071050-6 gnd Genanalyse (DE-588)4200230-8 gnd Mathematisches Modell (DE-588)4114528-8 gnd
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title	Phylogenetic networks concepts, algorithms and applications
title_auth	Phylogenetic networks concepts, algorithms and applications
title_exact_search	Phylogenetic networks concepts, algorithms and applications
title_full	Phylogenetic networks concepts, algorithms and applications Daniel H. Huson ; Regula Rupp ; Celine Scornavacca
title_fullStr	Phylogenetic networks concepts, algorithms and applications Daniel H. Huson ; Regula Rupp ; Celine Scornavacca
title_full_unstemmed	Phylogenetic networks concepts, algorithms and applications Daniel H. Huson ; Regula Rupp ; Celine Scornavacca
title_short	Phylogenetic networks
title_sort	phylogenetic networks concepts algorithms and applications
title_sub	concepts, algorithms and applications
topic	Datenverarbeitung Mathematik Cladistic analysis Data processing Cladistic analysis Mathematics Phylogeny Datenverarbeitung (DE-588)4011152-0 gnd Phylogenie (DE-588)4076110-1 gnd Methode (DE-588)4038971-6 gnd Phylogenetische Systematik (DE-588)4174592-9 gnd Evolution (DE-588)4071050-6 gnd Genanalyse (DE-588)4200230-8 gnd Mathematisches Modell (DE-588)4114528-8 gnd
topic_facet	Datenverarbeitung Mathematik Cladistic analysis Data processing Cladistic analysis Mathematics Phylogeny Phylogenie Methode Phylogenetische Systematik Evolution Genanalyse Mathematisches Modell
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Teilbibliothek Weihenstephan

Bestandsangaben von Teilbibliothek Weihenstephan
Signatur:	1002 BIO 175f 2011 B 890 Lageplan
Exemplar 1	Ausleihbar Am Standort