Proteome bioinformatics:
Saved in:
| Other Authors: | |
|---|---|
| Format: | Book |
| Language: | English |
| Published: |
New York, NY
Humana Press
2010
|
| Series: | Methods in molecular biology
604 |
| Subjects: | |
| Links: | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=018743377&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| Physical Description: | XI, 403 S. graph. Darst. |
| ISBN: | 9781607614432 |
Staff View
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Record in the Search Index
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| adam_text | Titel: Proteome bioinformatics
Autor: Hubbard, Simon J.
Jahr: 2010
Contents
Preface............................................................. v
Contributors......................................................... ix
1 An Introduction to Proteome Bioinformatics............................ 1
Andrew R. Jones and Simon J. Hubbard
2 Bioinformatics Methods for Protein Identification Using Peptide
Mass Fingerprinting............................................... 7
Zhao Song, Luonan Chen, and Dong Xu
3 Computational Approaches to Peptide Identification via Tandem MS.......... 23
Simon J. Hubbard
4 Scoring and Validation of Tandem MS Peptide Identification Methods......... 43
Markus Brosch andjyoti Choudhary
5 Target-Decoy Search Strategy for Mass Spectrometry-Based Proteomics........ 55
Joshua E. Elias and Steven P. Gygi
6 Understanding and Exploiting Peptide Fragment Ion Intensities
Using Experimental and Informatic Approaches.......................... 73
Ashley C. Gucinski, Eric D. Dodds, Wenzhou Li, and Vicki H. Wysocki
7 Spectral Library Searching for Peptide Identification via Tandem MS.......... 95
Henry Lam and Ruedi Aebersold
8 De Novo Sequencing Methods in Proteomics............................ 105
Christopher Hughes, Bin Ma, and Gilles A. Lajoie
9 Cross Species Proteomics........................................... 123
J.C. Wright, R.J. Beynon, and S.J. Hubbard
10 Gene Model Detection Using Mass Spectrometry......................... 137
Bindu Nanduri, Nan Wang, Mark L. Lawrence, Susan M. Bridges,
and Shane C. Burgess
11 Signal Processing in Proteomics...................................... 145
Rene Hussong and Andreas Hildebrandt
12 A High-Performance Reconfigurable Computing Solution
for Peptide Mass Fingerprinting...................................... 163
Daniel Coca, Istvan Bogdan, and Robert J. Beynon
13 Mining Proteomic MS/MS Data for MRM Transitions..................... 187
Jennifer A. Chem (Mead), Luca Bianco, and Conrad Bessant
14 OpenMS and TOPP: Open Source Software for LC MS Data Analysis......... 201
KnutReinert and Oliver Kohlbacher
15 Trans-Proteomic Pipeline: A Pipeline for Proteomic Analysis................. 213
Patrick G.A. Pedrioli
VII
viii Contents
16 Informatics and Statistics for Analyzing 2-D Gel Electrophoresis Images........ 239
Andrew W. Dowsey, Jeffrey S. Morris, Howard B. Gutstein,
and Guang-Zhong Tang
17 Automated Generic Analysis Tools for Protein Quantitation Using Stable Isotope
Labeling........................................................ 257
Wen-Lian Hsu and Ting-Yi Sung
18 An Overview of Label-Free Quantitation Methods in Proteomics
by Mass Spectrometry.............................................. 273
Jason W.H. Wong and Gerard Cagney
19 The PeptideAtlas Project............................................ 285
Eric W. Deutsch
20 Using the PRIDE Proteomics Identifications Database for Knowledge
Discovery and Data Analysis......................................... 297
Philip Jones and Lennart Martens
21 Molecular Interactions and Data Standardisation.......................... 309
Sandra Orchard and Samuel Kerrien
22 Mass Spectrometer Output File Format mzML........................... 319
Eric W. Deutsch
23 Managing Experimental Data Using FuGE.............................. 333
Andrew 2L Jones and Allyson L. Lister
24 Proteomics Data Collection (ProDaC): Publishing and Collecting
Proteomics Data Sets in Public Repositories Using Standard Formats.......... 345
Christian Stephan, Martin Eisenacher, Michael Kohl, and Helmut E. Meyer
25 Computational Resources for the Prediction and Analysis of Native
Disorder in Proteins............................................... 369
Melissa M. Pentony, Jonathan Ward, and David T. Jones
Index...............................................................395
|
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| illustrated | Illustrated |
| indexdate | 2024-12-20T14:02:18Z |
| institution | BVB |
| isbn | 9781607614432 |
| language | English |
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| physical | XI, 403 S. graph. Darst. |
| publishDate | 2010 |
| publishDateSearch | 2010 |
| publishDateSort | 2010 |
| publisher | Humana Press |
| record_format | marc |
| series | Methods in molecular biology |
| series2 | Methods in molecular biology Springer protocols |
| spellingShingle | Proteome bioinformatics Methods in molecular biology Datenverarbeitung Computational Biology methods Databases, Factual Mass Spectrometry Peptides analysis Proteome analysis Proteomics Data processing Proteomics methods Molekulare Bioinformatik (DE-588)4531334-9 gnd Proteom (DE-588)4576155-3 gnd |
| subject_GND | (DE-588)4531334-9 (DE-588)4576155-3 (DE-588)4143413-4 |
| title | Proteome bioinformatics |
| title_auth | Proteome bioinformatics |
| title_exact_search | Proteome bioinformatics |
| title_full | Proteome bioinformatics ed. by Simon J. Hubbard ... |
| title_fullStr | Proteome bioinformatics ed. by Simon J. Hubbard ... |
| title_full_unstemmed | Proteome bioinformatics ed. by Simon J. Hubbard ... |
| title_short | Proteome bioinformatics |
| title_sort | proteome bioinformatics |
| topic | Datenverarbeitung Computational Biology methods Databases, Factual Mass Spectrometry Peptides analysis Proteome analysis Proteomics Data processing Proteomics methods Molekulare Bioinformatik (DE-588)4531334-9 gnd Proteom (DE-588)4576155-3 gnd |
| topic_facet | Datenverarbeitung Computational Biology methods Databases, Factual Mass Spectrometry Peptides analysis Proteome analysis Proteomics Data processing Proteomics methods Molekulare Bioinformatik Proteom Aufsatzsammlung |
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