Availability: Using MPI | Technische Universität München

Using MPI: portable parallel programming with the message-passing interface

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Bibliographic Details
Main Authors:	Gropp, William 1955- (Author), Lusk, Ewing (Author), Skjellum, Anthony (Author)
Format:	Book
Language:	English
Published:	Cambridge, Mass. [u.a.] MIT Press 1999
Edition:	2. ed.
Series:	Scientific and engineering computation series
Subjects:	Parallelprogrammering Computer interfaces Parallel computers > Programming Parallel programming (Computer science) Programmierung MPI > Schnittstelle Parallelverarbeitung
Links:	http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=008928261&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA
Physical Description:	XXII, 371 S. graph. Darst.
ISBN:	026257134X 0262571323 9780262571340 9780262571326

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adam_text	USING MPI PORTABLE PARALLEL PROGRAMMING WITH THE MESSAGE-PASSING INTERFACE SECOND EDITION WILLIAM GROPP EWING LUSK ANTHONY SKJELMM THE MIT PRESS CAMBRIDGE, MASSACHUSETTS LONDON, ENGLAND CONTENTS SERIES FOREWORD XIII PREFACE TO THE SECOND EDITION XV PREFACE TO THE FIRST EDITION XIX 1 BACKGROUND 1 1.1 WHY PARALLEL COMPUTING? 1 1.2 OBSTACLES TO PROGRESS 2 1.3 WHY MESSAGE PASSING? 3 1.3.1 PARALLEL COMPUTATIONAL MODELS 3 1.3.2 ADVANTAGES OF THE MESSAGE-PASSING MODEL 9 1.4 EVOLUTION OF MESSAGE-PASSING SYSTEMS 10 1.5 THE MPI FORUM 11 2 INTRODUCTION TO MPI 13 2.1 GOAL 13 2.2 WHAT IS MPI? 13 2.3 BASIC MPI CONCEPTS 14 2.4 OTHER INTERESTING FEATURES OF MPI 18 2.5 IS MPI LARGE OR SMALL? 20 2.6 DECISIONS LEFT TO THE IMPLEMENTOR 21 3 USING MPI IN SIMPLE PROGRAMS 23 3.1 A FIRST MPI PROGRAM 23 3.2 RUNNING YOUR FIRST MPI PROGRAM 28 3.3 A FIRST MPI PROGRAM IN C 29 3.4 A FIRST MPI PROGRAM IN C++ 29 3.5 TIMING MPI PROGRAMS 34 3.6 A SELF-SCHEDULING EXAMPLE: MATRIX-VECTOR MULTIPLICATION 35 3.7 STUDYING PARALLEL PERFORMANCE 43 3.7.1 ELEMENTARY SCALABILITY CALCULATIONS 43 3.7.2 GATHERING DATA ON PROGRAM EXECUTION 45 3.7.3 INSTRUMENTING A PARALLEL PROGRAM WITH MPE LOGGING 46 VLLL CONTENTS 3.7.4 EVENTS AND STATES 47 3.7.5 INSTRUMENTING THE MATRIX-MATRIX MULTIPLY PROGRAM 47 3.7.6 NOTES ON IMPLEMENTATION OF LOGGING 49 3.7.7 EXAMINING LOGFILES WITH UPSHOT 52 3.8 USING COMMUNICATORS 53 3.9 ANOTHER WAY OF FORMING NEW COMMUNICATORS 59 3.10 A HANDY GRAPHICS LIBRARY FOR PARALLEL PROGRAMS 62 3.11 COMMON ERRORS AND MISUNDERSTANDINGS 64 3.12 APPLICATION: QUANTUM MONTE CARLO CALCULATIONS IN NUCLEAR PHYSICS 66 3.13 SUMMARY OF A SIMPLE SUBSET OF MPI 67 4 INTERMEDIATE MPI 69 4.1 THE POISSON PROBLEM 70 4.2 TOPOLOGIES 73 4.3 A CODE FOR THE POISSON PROBLEM 81 4.4 USING NONBLOCKING COMMUNICATIONS 93 4.5 SYNCHRONOUS SENDS AND SAFE PROGRAMS 96 4.6 MORE ON SCALABILITY 96 4.7 JACOBI WITH A 2-D DECOMPOSITION 98 4.8 AN MPI DERIVED DATATYPE 100 4.9 OVERLAPPING COMMUNICATION AND COMPUTATION 101 4.10 MORE ON TIMING PROGRAMS 105 4.11 THREE DIMENSIONS 107 4.12 COMMON ERRORS AND MISUNDERSTANDINGS 107 4.13 APPLICATION: SIMULATING VORTEX EVOLUTION IN SUPERCONDUCTING MATERIALS 109 5 ADVANCED MESSAGE PASSING IN MPI 111 5.1 MPI DATATYPES 111 5.1.1 BASIC DATATYPES AND CONCEPTS 111 5.1.2 DERIVED DATATYPES 114 CONTENTS 5.1.3 UNDERSTANDING EXTENTS 117 5.2 THE N-BODY PROBLEM 117 5.2.1 GATHER 118 5.2.2 NONBLOCKING PIPELINE 123 5.2.3 MOVING PARTICLES BETWEEN PROCESSES 124 5.2.4 SENDING DYNAMICALLY ALLOCATED DATA 132 5.2.5 USER-CONTROLLED DATA PACKING 134 5.3 VISUALIZING THE MANDELBROT SET 138 5.3.1 SENDING ARRAYS OF STRUCTURES 145 5.4 GAPS IN DATATYPES 146 5.4.1 MPI-2 FUNCTIONS FOR MANIPULATING EXTENTS 148 5.5 NEW MPI-2 DATATYPE ROUTINES 150 5.6 MORE ON DATATYPES FOR STRUCTURES 152 5.7 DEPRECATED FUNCTIONS 154 5.8 COMMON ERRORS AND MISUNDERSTANDINGS 156 6 PARALLEL LIBRARIES 157 6.1 MOTIVATION 157 6.1.1 THE NEED FOR PARALLEL LIBRARIES 157 6.1.2 COMMON DEFICIENCIES OF PREVIOUS MESSAGE-PASSING SYSTEMS 158 6.1.3 REVIEW OF MPI FEATURES THAT SUPPORT LIBRARIES 160 6.2 A FIRST MPI LIBRARY 163 6.2.1 MPI-2 ATTRIBUTE-CACHING ROUTINES 172 6.2.2 A C++ ALTERNATIVE TO MPI_COMM_DUP 172 6.3 LINEAR ALGEBRA ON GRIDS 177 6.3.1 MAPPINGS AND LOGICAL GRIDS 178 6.3.2 VECTORS AND MATRICES 181 6.3.3 COMPONENTS OF A PARALLEL LIBRARY 185 6.4 THE LINPACK BENCHMARK IN MPI 189 6.5 STRATEGIES FOR LIBRARY BUILDING 190 6.6 EXAMPLES OF LIBRARIES 192 X CONTENTS 7 OTHER FEATURES OF MPI 195 7.1 SIMULATING SHARED-MEMORY OPERATIONS 195 7.1.1 SHARED VS. DISTRIBUTED MEMORY 195 7.1.2 A COUNTER EXAMPLE 196 7.1.3 THE SHARED COUNTER USING POLLING INSTEAD OF AN EXTRA PROCESS 200 7.1.4 FAIRNESS IN MESSAGE PASSING 201 7.1.5 EXPLOITING REQUEST-RESPONSE MESSAGE PATTERNS 202 7.2 APPLICATION: FULL-CONFIGURATION INTERACTION 205 7.3 ADVANCED COLLECTIVE OPERATIONS 206 7.3.1 DATA MOVEMENT 206 7.3.2 COLLECTIVE COMPUTATION 206 7.3.3 COMMON ERRORS AND MISUNDERSTANDINGS 213 7.4 INTERCOMMUNICATORS 214 7.5 HETEROGENEOUS COMPUTING 220 7.6 THE MPI PROFILING INTERFACE 222 7.6.1 FINDING BUFFERING PROBLEMS 226 7.6.2 FINDING LOAD IMBALANCES 228 7.6.3 THE MECHANICS OF USING THE PROFILING INTERFACE 228 7.7 ERROR HANDLING 229 7.7.1 ERROR HANDLERS 230 7.7.2 AN EXAMPLE OF ERROR HANDLING 233 7.7.3 USER-DEFINED ERROR HANDLERS 234 7.7.4 TERMINATING MPI PROGRAMS 237 7.7.5 MPI-2 FUNCTIONS FOR ERROR HANDLING 239 7.8 THE MPI ENVIRONMENT 240 7.8.1 PROCESSOR NAME 242 7.8.2 IS MPI INITIALIZED? 242 7.9 DETERMINING THE VERSION OF MPI 243 7.10 OTHER FUNCTIONS IN MPI 245 7.11 APPLICATION: COMPUTATIONAL FLUID DYNAMICS 246 7.11.1 PARALLEL FORMULATION 246 CONTENTS 7.11.2 PARALLEL IMPLEMENTATION 248 8 UNDERSTANDING HOW MPI IMPLEMENTATIONS WORK 253 8.1 INTRODUCTION 253 8.1.1 SENDING DATA 253 8.1.2 RECEIVING DATA 254 8.1.3 RENDEZVOUS PROTOCOL 254 8.1.4 MATCHING PROTOCOLS TO MPI S SEND MODES 255 8.1.5 PERFORMANCE IMPLICATIONS 256 8.1.6 ALTERNATIVE MPI IMPLEMENTATION STRATEGIES 257 8.1.7 TUNING MPI IMPLEMENTATIONS 257 8.2 HOW DIFFICULT IS MPI TO IMPLEMENT? 257 8.3 DEVICE CAPABILITIES AND THE MPI LIBRARY DEFINITION 258 8.4 RELIABILITY OF DATA TRANSFER 259 9 COMPARING MPI WITH OTHER SYSTEMS FOR 261 INTERPROCESS COMMUNICATION 9.1 SOCKETS 261 9.1.1 PROCESS STARTUP AND SHUTDOWN 263 9.1.2 HANDLING FAULTS 265 9.2 PVM 3 266 9.2.1 THE BASICS 267 9.2.2 MISCELLANEOUS FUNCTIONS 268 9.2.3 COLLECTIVE OPERATIONS 268 9.2.4 MPI COUNTERPARTS OF OTHER FEATURES 269 9.2.5 FEATURES NOT IN MPI 270 9.2.6 PROCESS STARTUP 270 9.2.7 MPI AND PVM RELATED TOOLS 271 9.3 WHERE TO LEARN MORE 272 10 BEYOND MESSAGE PASSING 273 10.1 DYNAMIC PROCESS MANAGEMENT 274 10.2 THREADS 275 XU CONTENTS 10.3 ACTION AT A DISTANCE 276 10.4 PARALLEL I/O 277 10.5 MPI-2 277 10.6 WILL THERE BE AN MPI-3? 278 10.7 FINAL WORDS 278 GLOSSARY OF SELECTED TERMS 27 9 A SUMMARY OF MPI-1 ROUTINES AND THEIR 289 ARGUMENTS B THE MPICH IMPLEMENTATION OF MPI 329 C THE MPE MULTIPROCESSING ENVIRONMENT 337 D MPI RESOURCES ON THE WORLD WIDE WEB 345 E LANGUAGE DETAILS 347 REFERENCES 353 SUBJECT INDEX 363 FUNCTION AND TERM INDEX 367
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spellingShingle	Gropp, William 1955- Lusk, Ewing Skjellum, Anthony Using MPI portable parallel programming with the message-passing interface Parallelprogrammering gtt Computer interfaces Parallel computers Programming Parallel programming (Computer science) Programmierung (DE-588)4076370-5 gnd MPI Schnittstelle (DE-588)4456003-5 gnd Parallelverarbeitung (DE-588)4075860-6 gnd
subject_GND	(DE-588)4076370-5 (DE-588)4456003-5 (DE-588)4075860-6
title	Using MPI portable parallel programming with the message-passing interface
title_auth	Using MPI portable parallel programming with the message-passing interface
title_exact_search	Using MPI portable parallel programming with the message-passing interface
title_full	Using MPI portable parallel programming with the message-passing interface William Gropp ; Ewing Lusk ; Anthony Skjellum
title_fullStr	Using MPI portable parallel programming with the message-passing interface William Gropp ; Ewing Lusk ; Anthony Skjellum
title_full_unstemmed	Using MPI portable parallel programming with the message-passing interface William Gropp ; Ewing Lusk ; Anthony Skjellum
title_short	Using MPI
title_sort	using mpi portable parallel programming with the message passing interface
title_sub	portable parallel programming with the message-passing interface
topic	Parallelprogrammering gtt Computer interfaces Parallel computers Programming Parallel programming (Computer science) Programmierung (DE-588)4076370-5 gnd MPI Schnittstelle (DE-588)4456003-5 gnd Parallelverarbeitung (DE-588)4075860-6 gnd
topic_facet	Parallelprogrammering Computer interfaces Parallel computers Programming Parallel programming (Computer science) Programmierung MPI Schnittstelle Parallelverarbeitung
url	http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=008928261&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA
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